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iPSC Gene Editing & Quality Control Solution

iPSC Gene Editing & Quality Control Solution

iPSC
FDA April 2024 Guidance · CDE Full Compliance

iPSC Gene Editing
& Quality Control
End-to-End Safety Assessment

Induced Pluripotent Stem Cells (iPSCs) combined with CRISPR gene editing enable universal, off-the-shelf cell therapy products. However, genomic instability, off-target effects, and epigenetic abnormalities during reprogramming and culture remain critical bottlenecks to clinical translation.

Complete Regulatory to Solution Logic
01
Regulatory MandateFDA requires 50X WGS and COSMIC database comparison
02
Industry Pain PointComplex vendor coordination, long timelines, inconsistent data
03
Shutong End-to-End SolutionGenetic + Epigenetic + Off-Target Tripartite Assessment
ISO 9001 Certified · CNAS Accredited Lab
30+ Successful iPSC Projects
FDA & CDE Latest Compliance
Served 50+ Global CGT Companies
INDUSTRY BACKGROUND

The Next Frontier in Cell Therapy

iPSC technology is transforming cell therapy from personalized to universal. Global regulators have imposed unprecedentedly strict safety requirements for iPSC-derived products.

FDA April 2024 Latest Regulatory Requirements

In "Safety Testing of Human Allogeneic Cells", the FDA explicitly requires whole genome sequencing (WGS) and analysis for extensively expanded cells including iPSCs. For gene-edited stem cell banks, WGS must be performed at a minimum depth of 50X, with comparison against the COSMIC oncogenic mutation database to screen for SNVs, InDels, CNVs, and SVs.

Core Requirements: 50X WGS Depth | COSMIC Database Comparison | Gene-Edited Cell Banks as MCB | Comprehensive Variant Screening

Three Key Industry Pain Points

  • Genetic Stability Monitoring: iPSCs accumulate mutations during reprogramming and passaging; high-depth WGS is costly and time-consuming
  • Complex Off-Target Assessment: Multiple orthogonal methods required by regulators, making optimal selection difficult
  • Vendor Coordination Complexity: Safety assessments span multiple platforms, leading to extended timelines
SOLUTION

Tripartite End-to-End Safety Assessment System

Our solution is supported by three core technology platforms, covering the entire workflow from iPSC banking to IND filing, providing one-stop safety assessment services.

1

Genetic Stability Testing Platform

Uses ≥50X depth whole genome sequencing (WGS) and whole exome sequencing (WES) combined with multi-algorithm variant detection strategies to comprehensively screen SNVs, InDels, CNVs, and SVs. All variants are compared against the COSMIC database with a focus on oncogenic mutations.

Detection Sensitivity: 0.1% VAF
2

Epigenomic Multi-omics Platform

Integrates three complementary technologies: WGBS (Whole Genome Bisulfite Sequencing), CUT&Tag (Histone Modification Profiling), and ATAC-seq (Chromatin Accessibility Analysis) to comprehensively evaluate iPSC epigenetic stability across three dimensions.

3

CRISPR Off-Target Safety Platform

Employs a three-tier "Predict – Validate – Annotate" strategy combining GUIDE-seq, AID-seq, and PEM-seq gold-standard detection methods to comprehensively identify and validate potential off-target sites with ultra-high sensitivity down to 0.01%.

Detection Sensitivity: 0.01%
OUR ADVANTAGES

Why Choose Shutong Bio

We possess the most complete iPSC safety assessment technology chain in China, with deep regulatory expertise and full-process support from design to filing.

Full-Chain Technology Coverage

One of the few domestic companies simultaneously capable of providing end-to-end services across genetic stability testing, epigenomic multi-omics, off-target detection, on-target validation, vector integration analysis, and tumorigenicity risk assessment. Standardized ISO 9001/CNAS processes ensure accurate and reliable results.

Rich CGT Industry Experience

Successfully served multiple leading CGT companies with in-depth understanding of IND filing regulatory requirements and technical challenges for iPSC gene-edited products. We provide not only testing data but also complete regulatory submission packages compliant with global standards.

Flexible Service Models

Supports both all-inclusive packages and individual services, with customized solutions tailored to each client's specific needs and budget. From standardized IND filing packages to full-process custom services, we offer multiple options to meet diverse requirements.

Dedicated Project Management

Each project is assigned a dedicated one-on-one project manager for full tracking and rapid response. Our unified technology platform ensures data consistency and traceability, reducing traditional project timelines from 6-9 months to just 3-5 months.

SERVICE MODELS

Flexible Service Options

We offer two service models to meet the needs of different clients at various development stages.

RECOMMENDED

Model 1: IND Safety Assessment Package

Applicable Scenario

Clients preparing for IND filing requiring complete safety assessment data

Service Content
Genetic Stability Testing (WGS)Oncogene ScreeningOff-Target Detection & Validation
Advanced: Epigenomic Multi-omicsAdvanced: On-Target Editing ValidationAdvanced: Vector Integration Analysis

Deliverables: Complete IND-compliant testing report + expert interpretation + regulatory support

FLEXIBLE

Model 2: Individual Technical Services

Applicable Scenario

Clients with specific testing needs requiring flexible combinations

Available Services
WGS/WES SequencingWGBS Methylation AnalysisCUT&Tag Histone ProfilingATAC-seq Chromatin AnalysisGUIDE-seq Off-Target DetectionPEM-seq Translocation DetectionVector Integration AnalysisOn-Target Editing Validation

Deliverables: Single or multiple testing data reports + technical support

CLIENT VALUE

Conventional Approach vs Shutong Solution

Our one-stop solution significantly reduces your project cost and timeline while improving regulatory submission success rates.

Core Value Comparison

Comparison Dimension
Conventional Approach
Shutong Solution
Number of Vendors Required
3–5 vendors
1 vendor
End-to-End Project Timeline
6–9 months
3–5 months
Data Consistency
Multiple platforms, difficult to compare
Unified platform, fully traceable
Technical Support
Fragmented communication
Dedicated one-on-one PM
Regulatory Support
Data only
Complete submission package + expert guidance
GET STARTED

Developing an iPSC Gene Editing Product?

Tell us about your product type and development stage. We will provide a customized iPSC safety assessment plan and timeline compliant with FDA/CDE requirements.