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TREX2-FrCas9 nuclease

TREX2-FrCas9 Nuclease


Product Introduction

TREX2-FrCas9 is an engineered protein created by fusing FrCas9 with Three-prime Repair Exonuclease 2 (TREX2). By introducing exonuclease activity, it significantly alters the DNA repair outcomes produced by the CRISPR-Cas9 system. TREX2 is an exonuclease with 3'→5' directionality that progressively digests nucleotides from DNA double-strand break ends. When fused with FrCas9, it can generate larger fragment deletions at the cleavage site.

Traditional CRISPR-Cas9 systems, after introducing DNA double-strand breaks, rely on the cellular non-homologous end joining (NHEJ) pathway for repair, which typically results in small insertion or deletion mutations (mostly less than 10 bp). This small-scale editing may be insufficient to completely disrupt gene function for certain applications, particularly those targeting non-coding RNAs, regulatory elements, or protein domains with structural functions. The TREX2-FrCas9 fusion protein overcomes this limitation: after FrCas9 generates a double-strand break at the target site, the fused TREX2 immediately performs 3'→5' exonucleolytic digestion on the broken ends, enlarging the gap and forcing the cell to produce significantly larger deletions (up to hundreds of base pairs) during NHEJ repair.


Product Specifications

Parameter

Specification

Source

Recombinant expression in E. coli

Molecular Weight

~160 kDa

Concentration

20 µM

PAM Sequence

5'-NNTA-3'

Cleavage Product

Blunt-ended DSB

Purity

≥95% (SDS-PAGE)

Endotoxin

<1 EU/μg

Storage Buffer

50 mM Tris-HCl, 300 mM NaCl, 0.1 mM EDTA, 1 mM DTT, 50% Glycerol

10× Reaction Buffer

50 mM Tris-HCl, 100 mM NaCl, 10 mM MgCl₂, 100 μg/ml BSA, pH 7.9

Storage Conditions

Long-term storage at -80°C; short-term storage at -20°C

Product Specifications

Specifications

Catalog Number

Concentration

Volume

100 pmol

GR100901

20 μM

5 μL

500 pmol

GR100902

20 μM

25 μL

2500 pmol

GR100903

20 μM

125 μL

Application Scenarios

Large Fragment Deletions: Efficiently generating broad genomic deletions.

Non-coding RNA Knockout: Effective knockout of small RNA genes such as microRNA and lncRNA.

Regulatory Element Deletion: Deleting regulatory sequences like enhancers and silencers.

Complete Gene Inactivation: Ensuring complete functional loss of target genes.

Structural Variation Studies: Modeling diseases associated with large fragment deletions.

References

He Y, et al. (2024). Expanding plant genome editing scope and profiles with CRISPR-FrCas9 systems targeting palindromic TA sites. Plant Biotechnol J. 22(9):2488-2503.

Yin J, et al. (2022). Optimizing genome editing in plants using TREX2-Cas fusion proteins. Nature Plants. 8(8):930-939.

Tian R, et al. (2025). Systematic high-throughput evaluation reveals FrCas9's superior specificity and efficiency for therapeutic genome editing. Science Advances. 11(13):7334.